PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.174600.3
Common NameCsa_4G125410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 326aa    MW: 35699.5 Da    PI: 5.2527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.174600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH566.9e-183685255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Cucsa.174600.3 36 RSKHSETEQRRRSKINERFQILRELIPQN----DQKRDKASFLLEVIEYIQFLQ 85
                    899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1932105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.0473484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-2234105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-153685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-163688No hitNo description
SMARTSM003531.2E-124090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVKTSKSIHE RFEDDANESG VKIEGKSGES KASGHRSKHS ETEQRRRSKI NERFQILREL  60
IPQNDQKRDK ASFLLEVIEY IQFLQEKLNM YEGSCQGWSS EPSKLMPWNY RAADSYVDHS  120
QVVKRGSNHE SAVVFSQAML TNAPNVMDAD LGPTAVLNAV DHTLVSATQG LPMSMHTQPI  180
AFDPVGRSSL STESLDEPVS GSENISSRTQ AELLPGRTCT TTGFLNQAVS DQDDLTPESE  240
LESISGAYSH GLLSTLTQAL EASGVDLSQT NISVKVDVGK RANRAISLSE DDKQQSLNNQ  300
VMGQSIHGCF SEDSEQAHKK LRTGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653407.10.0PREDICTED: transcription factor BIM2 isoform X2
TrEMBLA0A0A0KVW50.0A0A0A0KVW5_CUCSA; Uncharacterized protein
STRINGVIT_14s0083g00930.t011e-107(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-55BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]